---
name: Bug report
about: File a bug report
title: "[BUG]"
labels: ''
assignees: ''

---

**Software versions**
Specify what versions of the following you are using:
- `HTSeq`
- `Python`
- operating system
- (if applicable) `STAR` or other genome/transcriptome aligner

**Describe the bug**
A clear and concise description of what the bug is.

**Minimal example showing the bug**
Attach BAM, GTF, or other files needed to reproduce this bug. Each file should be **smaller than 5MB**. Please do not attach huge files - we won't have time to look at those.

**To Reproduce**
Steps to reproduce the behavior. If this is an `htseq-count` bug report, paste the exact command line you ran on the small example data (see above).
